Data from Sophie’s samples (human cells)
Conditions: treated w/ or w/o H2O2
Biological replicates (4, each at a different date)
Getting some stats yay
table(res_tbl$padj<=0.05) # significant genes##
## FALSE TRUE
## 10761 5551
table(res_tbl$padj<=0.05&res_tbl$log2FoldChange<=-1) # signif and downreg##
## FALSE TRUE
## 18059 721
table(res_tbl$padj<=0.05&res_tbl$log2FoldChange>=1) # signif and upreg##
## FALSE TRUE
## 17946 955
Gene set enrichment analysis using - pval < 0,05 - pval < 0,001
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| GOBP_SENSORY_PERCEPTION_OF_SMELL | 14 | -2.604039 | 0.0000072 | 0.0000063 |
| GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_STIMULUS | 449 | 1.929584 | 0.0000218 | 0.0000189 |
| GOBP_POSITIVE_REGULATION_OF_TRANSCRIPTION_BY_RNA_POLYMERASE_II | 390 | 1.859271 | 0.0002490 | 0.0002162 |
| GOBP_REGULATION_OF_CELLULAR_COMPONENT_MOVEMENT | 260 | 2.023275 | 0.0002875 | 0.0002496 |
| GOBP_SENSORY_PERCEPTION | 103 | -2.330712 | 0.0002948 | 0.0002559 |
| GOBP_NEGATIVE_REGULATION_OF_SIGNALING | 388 | 1.830149 | 0.0004265 | 0.0003703 |
| GOBP_DETECTION_OF_STIMULUS_INVOLVED_IN_SENSORY_PERCEPTION | 20 | -2.418768 | 0.0009137 | 0.0007933 |
| GOBP_NERVOUS_SYSTEM_PROCESS | 213 | -2.106216 | 0.0009137 | 0.0007933 |
| GOBP_DETECTION_OF_STIMULUS | 38 | -2.453341 | 0.0010062 | 0.0008736 |
| GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS | 226 | 1.923200 | 0.0010748 | 0.0009332 |
| GOBP_POSITIVE_REGULATION_OF_LOCOMOTION | 151 | 2.093809 | 0.0012865 | 0.0011169 |
| GOBP_REGULATION_OF_VASCULATURE_DEVELOPMENT | 75 | 2.239023 | 0.0014072 | 0.0012217 |
| GOBP_SENSORY_PERCEPTION_OF_CHEMICAL_STIMULUS | 22 | -2.421340 | 0.0014957 | 0.0012985 |
| GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS | 244 | 1.871503 | 0.0015126 | 0.0013132 |
| GOBP_CELLULAR_RESPONSE_TO_ENDOGENOUS_STIMULUS | 375 | 1.764720 | 0.0015126 | 0.0013132 |
| GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_MORPHOGENESIS | 226 | 1.872278 | 0.0017350 | 0.0015063 |
| GOBP_CARDIAC_MUSCLE_CELL_PROLIFERATION | 13 | 2.319503 | 0.0017560 | 0.0015245 |
| GOBP_CARDIAC_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 10 | 2.293977 | 0.0017560 | 0.0015245 |
| GOBP_STRIATED_MUSCLE_CELL_PROLIFERATION | 16 | 2.337177 | 0.0029957 | 0.0026008 |
| GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS | 446 | 1.629485 | 0.0040879 | 0.0035490 |
| GOBP_CELL_MIGRATION | 361 | 1.694351 | 0.0044389 | 0.0038538 |
| GOBP_RESPONSE_TO_PURINE_CONTAINING_COMPOUND | 30 | 2.286489 | 0.0050651 | 0.0043974 |
| GOBP_REGULATION_OF_EPITHELIAL_CELL_MIGRATION | 58 | 2.133457 | 0.0050651 | 0.0043974 |
| GOBP_INFLAMMATORY_RESPONSE | 197 | 1.869834 | 0.0050651 | 0.0043974 |
| GOBP_RESPONSE_TO_HORMONE | 252 | 1.819960 | 0.0050651 | 0.0043974 |
| GOBP_LOCOMOTION | 445 | 1.612518 | 0.0050651 | 0.0043974 |
| GOBP_CELLULAR_RESPONSE_TO_HORMONE_STIMULUS | 179 | 1.894588 | 0.0051440 | 0.0044659 |
| GOBP_RESPONSE_TO_GROWTH_FACTOR | 193 | 1.862017 | 0.0051440 | 0.0044659 |
| GOBP_RESPONSE_TO_STEROID_HORMONE | 97 | 2.043743 | 0.0051563 | 0.0044765 |
| GOBP_TISSUE_DEVELOPMENT | 464 | 1.601369 | 0.0051563 | 0.0044765 |
| GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND | 250 | 1.794170 | 0.0056766 | 0.0049283 |
| GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND | 442 | 1.639358 | 0.0058025 | 0.0050376 |
| GOBP_RESPONSE_TO_LIPID | 241 | 1.810103 | 0.0058378 | 0.0050682 |
| GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 14 | 2.260621 | 0.0060210 | 0.0052273 |
| GOBP_NEGATIVE_REGULATION_OF_CELL_DIFFERENTIATION | 161 | 1.897573 | 0.0060210 | 0.0052273 |
| GOBP_CYTOKINE_PRODUCTION | 210 | 1.823301 | 0.0060210 | 0.0052273 |
| GOBP_TRANSMEMBRANE_TRANSPORT | 368 | -1.683901 | 0.0064097 | 0.0055647 |
| GOBP_BLOOD_VESSEL_MORPHOGENESIS | 150 | 1.894404 | 0.0071274 | 0.0061878 |
| GOBP_VASCULATURE_DEVELOPMENT | 179 | 1.852547 | 0.0071274 | 0.0061878 |
| GOBP_MATERNAL_PLACENTA_DEVELOPMENT | 14 | 2.243884 | 0.0072902 | 0.0063291 |
| GOBP_RESPONSE_TO_LEUKEMIA_INHIBITORY_FACTOR | 32 | 2.182906 | 0.0080171 | 0.0069603 |
| GOBP_NADH_DEHYDROGENASE_COMPLEX_ASSEMBLY | 38 | -2.156904 | 0.0082786 | 0.0071872 |
| GOBP_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS | 259 | 1.710916 | 0.0082786 | 0.0071872 |
| GOBP_RESPONSE_TO_BMP | 37 | 2.114334 | 0.0089636 | 0.0077819 |
| GOBP_TISSUE_MIGRATION | 79 | 2.069218 | 0.0089636 | 0.0077819 |
| GOBP_REGULATION_OF_CELL_DEATH | 489 | 1.528277 | 0.0097257 | 0.0084436 |
| GOBP_ENDOTHELIAL_CELL_MIGRATION | 58 | 2.043752 | 0.0098770 | 0.0085750 |
| GOBP_RESPONSE_TO_MOLECULE_OF_BACTERIAL_ORIGIN | 91 | 1.981008 | 0.0101160 | 0.0087825 |
| GOBP_OXIDATIVE_PHOSPHORYLATION | 81 | -2.052380 | 0.0101222 | 0.0087878 |
| GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS | 77 | 2.003424 | 0.0104653 | 0.0090857 |
| GOBP_AMEBOIDAL_TYPE_CELL_MIGRATION | 102 | 1.972729 | 0.0104653 | 0.0090857 |
| GOBP_TUBE_DEVELOPMENT | 261 | 1.712302 | 0.0104653 | 0.0090857 |
| GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT | 348 | 1.629821 | 0.0104653 | 0.0090857 |
| GOBP_REGULATION_OF_CELL_DIFFERENTIATION | 386 | 1.607020 | 0.0104653 | 0.0090857 |
| GOBP_RESPONSE_TO_CAMP | 18 | 2.212699 | 0.0113149 | 0.0098233 |
| GOBP_INTRACELLULAR_RECEPTOR_SIGNALING_PATHWAY | 88 | 1.938250 | 0.0133152 | 0.0115599 |
| GOBP_TUBE_MORPHOGENESIS | 212 | 1.741479 | 0.0133152 | 0.0115599 |
| GOBP_REGULATION_OF_CELL_POPULATION_PROLIFERATION | 440 | 1.561554 | 0.0133152 | 0.0115599 |
| GOBP_NEURON_PROJECTION_GUIDANCE | 35 | -2.175450 | 0.0137225 | 0.0119135 |
| GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY | 59 | -2.066936 | 0.0137225 | 0.0119135 |
| GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT | 41 | 2.059890 | 0.0137225 | 0.0119135 |
| GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION | 130 | 1.864805 | 0.0137225 | 0.0119135 |
| GOBP_INORGANIC_ION_TRANSMEMBRANE_TRANSPORT | 202 | -1.777687 | 0.0137225 | 0.0119135 |
| GOBP_POSITIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS | 318 | 1.625889 | 0.0139540 | 0.0121145 |
| GOBP_NEGATIVE_REGULATION_OF_MAP_KINASE_ACTIVITY | 27 | 2.140814 | 0.0150498 | 0.0130658 |
| GOBP_TISSUE_REGENERATION | 20 | 2.131696 | 0.0150498 | 0.0130658 |
| GOBP_LEUKOCYTE_CHEMOTAXIS | 48 | 2.064539 | 0.0150498 | 0.0130658 |
| GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_MIGRATION | 44 | 2.031502 | 0.0150498 | 0.0130658 |
| GOBP_PROTEIN_LOCALIZATION_TO_EXTRACELLULAR_REGION | 94 | 1.939277 | 0.0150498 | 0.0130658 |
| GOBP_REGULATION_OF_PROTEIN_SECRETION | 63 | 1.936925 | 0.0150498 | 0.0130658 |
| GOBP_GROWTH | 277 | 1.668465 | 0.0150498 | 0.0130658 |
| GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT | 272 | 1.643786 | 0.0153826 | 0.0133548 |
| GOBP_MATERNAL_PROCESS_INVOLVED_IN_FEMALE_PREGNANCY | 19 | 2.117945 | 0.0158033 | 0.0137200 |
| GOBP_ATP_BIOSYNTHETIC_PROCESS | 27 | -2.116982 | 0.0158999 | 0.0138039 |
| GOBP_PHOSPHOLIPASE_C_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY | 12 | 2.100979 | 0.0158999 | 0.0138039 |
| GOBP_POSITIVE_REGULATION_OF_SIGNALING | 466 | 1.505051 | 0.0163440 | 0.0141894 |
| GOBP_ION_TRANSPORT | 365 | -1.621609 | 0.0169247 | 0.0146936 |
| GOBP_HOMEOSTATIC_PROCESS | 486 | 1.458519 | 0.0177165 | 0.0153810 |
| GOBP_MITOCHONDRIAL_ELECTRON_TRANSPORT_NADH_TO_UBIQUINONE | 34 | -2.100867 | 0.0177837 | 0.0154394 |
| GOBP_NEUTROPHIL_CHEMOTAXIS | 21 | 2.127063 | 0.0184240 | 0.0159952 |
| GOBP_ION_TRANSMEMBRANE_TRANSPORT | 267 | -1.714485 | 0.0184240 | 0.0159952 |
| GOBP_REGULATION_OF_ENDOTHELIAL_CELL_MIGRATION | 45 | 2.027747 | 0.0186452 | 0.0161873 |
| GOBP_GRANULOCYTE_CHEMOTAXIS | 26 | 2.064060 | 0.0188227 | 0.0163414 |
| GOBP_CELLULAR_RESPONSE_TO_CAMP | 14 | 2.114685 | 0.0194876 | 0.0169186 |
| GOBP_GRANULOCYTE_MIGRATION | 32 | 2.020678 | 0.0194876 | 0.0169186 |
| GOBP_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 49 | 1.977686 | 0.0194876 | 0.0169186 |
| GOBP_CELLULAR_RESPONSE_TO_STEROID_HORMONE_STIMULUS | 68 | 1.925401 | 0.0194876 | 0.0169186 |
| GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY | 134 | -1.801225 | 0.0194876 | 0.0169186 |
| GOBP_POSITIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS | 369 | 1.537165 | 0.0194876 | 0.0169186 |
| GOBP_NEGATIVE_REGULATION_OF_CELL_POPULATION_PROLIFERATION | 195 | 1.724688 | 0.0201575 | 0.0175002 |
| GOBP_DEVELOPMENTAL_GROWTH | 171 | 1.705632 | 0.0201995 | 0.0175367 |
| GOBP_POSITIVE_REGULATION_OF_PROTEIN_SECRETION | 35 | 2.026529 | 0.0206373 | 0.0179168 |
| GOBP_RESPONSE_TO_FIBROBLAST_GROWTH_FACTOR | 26 | 2.035942 | 0.0208099 | 0.0180666 |
| GOBP_RESPONSE_TO_MECHANICAL_STIMULUS | 50 | 1.990490 | 0.0208099 | 0.0180666 |
| GOBP_CELL_FATE_SPECIFICATION | 14 | -2.058121 | 0.0219911 | 0.0190921 |
| GOBP_INSULIN_SECRETION_INVOLVED_IN_CELLULAR_RESPONSE_TO_GLUCOSE_STIMULUS | 16 | 2.106438 | 0.0220611 | 0.0191529 |
| GOBP_REGULATION_OF_LEUKOCYTE_CHEMOTAXIS | 26 | 2.022610 | 0.0220611 | 0.0191529 |
| GOBP_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 28 | 2.067590 | 0.0220754 | 0.0191653 |
| GOBP_TRANSFORMING_GROWTH_FACTOR_BETA_RECEPTOR_SIGNALING_PATHWAY | 64 | 1.926464 | 0.0225810 | 0.0196043 |
| GOBP_POSITIVE_REGULATION_OF_MIRNA_TRANSCRIPTION | 15 | 2.075249 | 0.0233102 | 0.0202373 |
| GOBP_DEFENSE_RESPONSE_TO_GRAM_NEGATIVE_BACTERIUM | 17 | -2.072162 | 0.0233216 | 0.0202472 |
| GOBP_RESPONSE_TO_CORTICOSTEROID | 38 | 2.005354 | 0.0244370 | 0.0212156 |
| GOBP_MUSCLE_CELL_PROLIFERATION | 45 | 1.989396 | 0.0244370 | 0.0212156 |
| GOBP_RESPONSE_TO_KETONE | 50 | 1.967607 | 0.0244370 | 0.0212156 |
| GOBP_MUSCLE_STRUCTURE_DEVELOPMENT | 166 | 1.679903 | 0.0244370 | 0.0212156 |
| GOBP_NEGATIVE_REGULATION_OF_LOCOMOTION | 81 | 1.846947 | 0.0247284 | 0.0214685 |
| GOBP_NEURON_DEVELOPMENT | 290 | -1.645452 | 0.0263569 | 0.0228824 |
| GOBP_MESENCHYME_DEVELOPMENT | 70 | 1.843632 | 0.0264506 | 0.0229637 |
| GOBP_EMBRYONIC_ORGAN_DEVELOPMENT | 96 | 1.856386 | 0.0274905 | 0.0238666 |
| GOBP_REGULATION_OF_IMMUNE_SYSTEM_PROCESS | 385 | 1.508617 | 0.0274905 | 0.0238666 |
| GOBP_NEUTROPHIL_MIGRATION | 26 | 1.987493 | 0.0282883 | 0.0245592 |
| GOBP_REGULATION_OF_GRANULOCYTE_CHEMOTAXIS | 10 | 2.032485 | 0.0285848 | 0.0248166 |
| GOBP_CELLULAR_RESPONSE_TO_CORTICOSTEROID_STIMULUS | 20 | 2.025745 | 0.0301681 | 0.0261911 |
| GOBP_ENDOTHELIAL_CELL_APOPTOTIC_PROCESS | 19 | 2.015734 | 0.0306730 | 0.0266295 |
| GOBP_CELLULAR_RESPONSE_TO_LIPID | 158 | 1.732132 | 0.0306730 | 0.0266295 |
| GOBP_MULTI_MULTICELLULAR_ORGANISM_PROCESS | 48 | 1.956066 | 0.0308717 | 0.0268020 |
| GOBP_REGULATION_OF_RESPONSE_TO_STRESS | 428 | 1.489237 | 0.0327539 | 0.0284361 |
| GOBP_MUSCLE_TISSUE_DEVELOPMENT | 100 | 1.802422 | 0.0373395 | 0.0324172 |
| GOBP_EPIDERMIS_DEVELOPMENT | 74 | 1.864494 | 0.0381844 | 0.0331507 |
| GOBP_CELLULAR_RESPONSE_TO_KETONE | 32 | 1.923417 | 0.0394290 | 0.0342312 |
| GOBP_PROTON_TRANSMEMBRANE_TRANSPORT | 62 | -1.908784 | 0.0394290 | 0.0342312 |
| GOBP_CELLULAR_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND | 166 | 1.612745 | 0.0395728 | 0.0343561 |
| GOBP_EXPORT_FROM_CELL | 207 | 1.588162 | 0.0437252 | 0.0379610 |
| GOBP_RAS_PROTEIN_SIGNAL_TRANSDUCTION | 118 | 1.724846 | 0.0492623 | 0.0427682 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| GOMF_GATED_CHANNEL_ACTIVITY | 45 | -2.722206 | 0.0000087 | 0.0000080 |
| GOMF_PASSIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 78 | -2.505033 | 0.0000087 | 0.0000080 |
| GOMF_TRANSPORTER_ACTIVITY | 311 | -2.094972 | 0.0000087 | 0.0000080 |
| GOMF_INORGANIC_MOLECULAR_ENTITY_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 159 | -2.145919 | 0.0002807 | 0.0002573 |
| GOMF_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 193 | -2.039061 | 0.0003346 | 0.0003067 |
| GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME | 110 | -2.151438 | 0.0006879 | 0.0006306 |
| GOMF_DNA_BINDING_TRANSCRIPTION_ACTIVATOR_ACTIVITY | 114 | 2.086975 | 0.0006879 | 0.0006306 |
| GOMF_CATION_CHANNEL_ACTIVITY | 55 | -2.345008 | 0.0010142 | 0.0009297 |
| GOMF_STRUCTURAL_MOLECULE_ACTIVITY | 205 | -1.940196 | 0.0011552 | 0.0010589 |
| GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NAD_P_H_QUINONE_OR_SIMILAR_COMPOUND_AS_ACCEPTOR | 35 | -2.341321 | 0.0022323 | 0.0020463 |
| GOMF_NADH_DEHYDROGENASE_ACTIVITY | 31 | -2.305218 | 0.0022323 | 0.0020463 |
| GOMF_EXTRACELLULAR_MATRIX_STRUCTURAL_CONSTITUENT | 20 | -2.316265 | 0.0024774 | 0.0022709 |
| GOMF_VOLTAGE_GATED_CHANNEL_ACTIVITY | 24 | -2.270734 | 0.0027055 | 0.0024801 |
| GOMF_MOLECULAR_TRANSDUCER_ACTIVITY | 161 | -1.934640 | 0.0027055 | 0.0024801 |
| GOMF_OXIDOREDUCTION_DRIVEN_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 47 | -2.259474 | 0.0027773 | 0.0025459 |
| GOMF_VOLTAGE_GATED_CATION_CHANNEL_ACTIVITY | 13 | -2.224729 | 0.0028445 | 0.0026075 |
| GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NAD_P_H | 40 | -2.237231 | 0.0035795 | 0.0032812 |
| GOMF_CATION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 145 | -1.924899 | 0.0050534 | 0.0046323 |
| GOMF_CALMODULIN_BINDING | 53 | -2.089502 | 0.0069635 | 0.0063832 |
| GOMF_METAL_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 75 | -2.026250 | 0.0077500 | 0.0071042 |
| GOMF_LIGAND_GATED_ION_CHANNEL_ACTIVITY | 22 | -2.149288 | 0.0082194 | 0.0075345 |
| GOMF_G_PROTEIN_COUPLED_RECEPTOR_ACTIVITY | 56 | -2.050913 | 0.0129778 | 0.0118963 |
| GOMF_POTASSIUM_CHANNEL_ACTIVITY | 11 | -2.065129 | 0.0167877 | 0.0153887 |
| GOMF_CALCIUM_ION_BINDING | 123 | -1.804922 | 0.0222617 | 0.0204066 |
| GOMF_PRIMARY_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 74 | -1.823311 | 0.0380247 | 0.0348560 |
| GOMF_SEQUENCE_SPECIFIC_DNA_BINDING | 468 | 1.446433 | 0.0380247 | 0.0348560 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| REACTOME_ANTIMICROBIAL_PEPTIDES | 11 | -2.416493 | 0.0000352 | 0.0000345 |
| REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION | 52 | -2.280567 | 0.0082333 | 0.0080533 |
| REACTOME_RESPIRATORY_ELECTRON_TRANSPORT_ATP_SYNTHESIS_BY_CHEMIOSMOTIC_COUPLING_AND_HEAT_PRODUCTION_BY_UNCOUPLING_PROTEINS | 85 | -2.137745 | 0.0165632 | 0.0162012 |
| REACTOME_COMPLEX_I_BIOGENESIS | 39 | -2.175214 | 0.0216863 | 0.0212124 |
| REACTOME_COLLAGEN_BIOSYNTHESIS_AND_MODIFYING_ENZYMES | 14 | -2.177601 | 0.0338810 | 0.0331406 |
| REACTOME_COLLAGEN_FORMATION | 17 | -2.143959 | 0.0403484 | 0.0394666 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| WP_OXIDATIVE_PHOSPHORYLATION | 42 | -2.432459 | 0.0013838 | 0.0012206 |
| WP_ELECTRON_TRANSPORT_CHAIN_OXPHOS_SYSTEM_IN_MITOCHONDRIA | 72 | -2.190281 | 0.0080174 | 0.0070716 |
| WP_NEOVASCULARISATION_PROCESSES | 11 | 2.178213 | 0.0106192 | 0.0093663 |
| WP_GLUCOCORTICOID_RECEPTOR_PATHWAY | 30 | 2.142475 | 0.0106192 | 0.0093663 |
| WP_MITOCHONDRIAL_COMPLEX_I_ASSEMBLY_MODEL_OXPHOS_SYSTEM | 39 | -2.119005 | 0.0106192 | 0.0093663 |
| WP_VEGFAVEGFR2_SIGNALING_PATHWAY | 199 | 1.732304 | 0.0106192 | 0.0093663 |
| WP_HEPATITIS_B_INFECTION | 63 | 1.988885 | 0.0189726 | 0.0167342 |
| WP_ANTIVIRAL_AND_ANTIINFLAMMATORY_EFFECTS_OF_NRF2_ON_SARSCOV2_PATHWAY | 12 | 2.104886 | 0.0218276 | 0.0192524 |
| WP_NUCLEAR_RECEPTORS_METAPATHWAY | 99 | 1.884068 | 0.0218276 | 0.0192524 |
| WP_ARYL_HYDROCARBON_RECEPTOR_PATHWAY_WP2586 | 32 | 2.009530 | 0.0251488 | 0.0221818 |
| WP_SARSCOV2_INNATE_IMMUNITY_EVASION_AND_CELLSPECIFIC_IMMUNE_RESPONSE | 16 | 2.010436 | 0.0430691 | 0.0379879 |
| WP_PREIMPLANTATION_EMBRYO | 11 | 1.997753 | 0.0430691 | 0.0379879 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| GOBP_POSITIVE_REGULATION_OF_TRANSCRIPTION_BY_RNA_POLYMERASE_II | 254 | 2.457021 | 0.0000008 | 0.0000006 |
| GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_STIMULUS | 279 | 2.284457 | 0.0000267 | 0.0000211 |
| GOBP_TISSUE_DEVELOPMENT | 275 | 2.236483 | 0.0000267 | 0.0000211 |
| GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY | 37 | -3.058197 | 0.0000338 | 0.0000266 |
| GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS | 134 | 2.462525 | 0.0000338 | 0.0000266 |
| GOBP_NEGATIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS | 144 | 2.448070 | 0.0000338 | 0.0000266 |
| GOBP_RESPONSE_TO_ENDOGENOUS_STIMULUS | 269 | 2.148553 | 0.0000865 | 0.0000682 |
| GOBP_NEGATIVE_REGULATION_OF_CELL_DIFFERENTIATION | 93 | 2.519234 | 0.0000893 | 0.0000705 |
| GOBP_RESPONSE_TO_MECHANICAL_STIMULUS | 29 | 2.682104 | 0.0001499 | 0.0001183 |
| GOBP_NEGATIVE_REGULATION_OF_SIGNALING | 241 | 2.161762 | 0.0001706 | 0.0001346 |
| GOBP_OXIDATIVE_PHOSPHORYLATION | 64 | -2.648267 | 0.0001748 | 0.0001379 |
| GOBP_RESPONSE_TO_GROWTH_FACTOR | 117 | 2.348734 | 0.0001748 | 0.0001379 |
| GOBP_POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS | 388 | 2.008098 | 0.0001748 | 0.0001379 |
| GOBP_POSITIVE_REGULATION_OF_NUCLEOBASE_CONTAINING_COMPOUND_METABOLIC_PROCESS | 439 | 1.952257 | 0.0001748 | 0.0001379 |
| GOBP_NADH_DEHYDROGENASE_COMPLEX_ASSEMBLY | 25 | -2.847777 | 0.0001927 | 0.0001521 |
| GOBP_CELLULAR_RESPONSE_TO_ENDOGENOUS_STIMULUS | 231 | 2.148787 | 0.0002535 | 0.0002000 |
| GOBP_REGULATION_OF_ANATOMICAL_STRUCTURE_MORPHOGENESIS | 137 | 2.278341 | 0.0002982 | 0.0002353 |
| GOBP_TUBE_DEVELOPMENT | 150 | 2.252512 | 0.0003245 | 0.0002560 |
| GOBP_REGULATION_OF_MULTICELLULAR_ORGANISMAL_DEVELOPMENT | 203 | 2.128797 | 0.0003342 | 0.0002637 |
| GOBP_REGULATION_OF_CELL_POPULATION_PROLIFERATION | 272 | 2.029179 | 0.0003342 | 0.0002637 |
| GOBP_POSITIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS | 197 | 2.165111 | 0.0003393 | 0.0002677 |
| GOBP_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 16 | 2.510212 | 0.0003880 | 0.0003061 |
| GOBP_LOCOMOTION | 253 | 2.067096 | 0.0004413 | 0.0003482 |
| GOBP_HOMEOSTATIC_PROCESS | 292 | 2.012246 | 0.0004413 | 0.0003482 |
| GOBP_REGULATION_OF_CELLULAR_COMPONENT_MOVEMENT | 160 | 2.213417 | 0.0004862 | 0.0003836 |
| GOBP_TUBE_MORPHOGENESIS | 117 | 2.248920 | 0.0004967 | 0.0003918 |
| GOBP_REGULATION_OF_CELL_DIFFERENTIATION | 233 | 2.030844 | 0.0007505 | 0.0005921 |
| GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND | 271 | 1.983926 | 0.0008758 | 0.0006910 |
| GOBP_NEUROGENESIS | 237 | 1.996374 | 0.0009515 | 0.0007507 |
| GOBP_CELL_MIGRATION | 208 | 2.049016 | 0.0011040 | 0.0008710 |
| GOBP_CIRCULATORY_SYSTEM_DEVELOPMENT | 163 | 2.077277 | 0.0011053 | 0.0008720 |
| GOBP_CARDIAC_MUSCLE_CELL_PROLIFERATION | 10 | 2.372932 | 0.0012034 | 0.0009494 |
| GOBP_RESPONSE_TO_ABIOTIC_STIMULUS | 213 | 2.009826 | 0.0013519 | 0.0010666 |
| GOBP_VASCULATURE_DEVELOPMENT | 107 | 2.236282 | 0.0014683 | 0.0011584 |
| GOBP_EPIDERMAL_CELL_DIFFERENTIATION | 25 | 2.431408 | 0.0014749 | 0.0011636 |
| GOBP_STRIATED_MUSCLE_CELL_PROLIFERATION | 13 | 2.393133 | 0.0015121 | 0.0011930 |
| GOBP_ANATOMICAL_STRUCTURE_FORMATION_INVOLVED_IN_MORPHOGENESIS | 141 | 2.097410 | 0.0015121 | 0.0011930 |
| GOBP_POSITIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS | 225 | 1.983671 | 0.0015121 | 0.0011930 |
| GOBP_ATP_BIOSYNTHETIC_PROCESS | 21 | -2.522712 | 0.0023498 | 0.0018539 |
| GOBP_POSITIVE_REGULATION_OF_CELLULAR_BIOSYNTHETIC_PROCESS | 429 | 1.792270 | 0.0023498 | 0.0018539 |
| GOBP_NEURON_DIFFERENTIATION | 201 | 1.990172 | 0.0024029 | 0.0018958 |
| GOBP_SKELETAL_SYSTEM_DEVELOPMENT | 65 | 2.244240 | 0.0026395 | 0.0020825 |
| GOBP_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION | 100 | 2.179565 | 0.0026395 | 0.0020825 |
| GOBP_RESPONSE_TO_HORMONE | 157 | 2.063305 | 0.0026395 | 0.0020825 |
| GOBP_MITOCHONDRIAL_ELECTRON_TRANSPORT_NADH_TO_UBIQUINONE | 26 | -2.529590 | 0.0032517 | 0.0025655 |
| GOBP_RESPIRATORY_ELECTRON_TRANSPORT_CHAIN | 47 | -2.289075 | 0.0040044 | 0.0031593 |
| GOBP_ANIMAL_ORGAN_MORPHOGENESIS | 114 | 2.072108 | 0.0040044 | 0.0031593 |
| GOBP_ATP_SYNTHESIS_COUPLED_ELECTRON_TRANSPORT | 45 | -2.346542 | 0.0049669 | 0.0039186 |
| GOBP_ELECTRON_TRANSPORT_CHAIN | 56 | -2.333223 | 0.0049669 | 0.0039186 |
| GOBP_CAMERA_TYPE_EYE_DEVELOPMENT | 45 | 2.223420 | 0.0055455 | 0.0043752 |
| GOBP_NEGATIVE_REGULATION_OF_MAP_KINASE_ACTIVITY | 18 | 2.329912 | 0.0055590 | 0.0043858 |
| GOBP_BLOOD_VESSEL_MORPHOGENESIS | 91 | 2.108160 | 0.0058404 | 0.0046079 |
| GOBP_MESENCHYMAL_CELL_DIFFERENTIATION | 34 | 2.237728 | 0.0061217 | 0.0048297 |
| GOBP_RESPONSE_TO_PURINE_CONTAINING_COMPOUND | 16 | 2.272731 | 0.0062683 | 0.0049454 |
| GOBP_NEGATIVE_REGULATION_OF_CELL_POPULATION_PROLIFERATION | 121 | 2.027320 | 0.0066089 | 0.0052142 |
| GOBP_EPITHELIAL_TO_MESENCHYMAL_TRANSITION | 29 | 2.299972 | 0.0067901 | 0.0053571 |
| GOBP_ATP_SYNTHESIS_COUPLED_PROTON_TRANSPORT | 13 | -2.317202 | 0.0068096 | 0.0053724 |
| GOBP_TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_SIGNALING_PATHWAY | 57 | 2.197304 | 0.0068675 | 0.0054182 |
| GOBP_DEVELOPMENTAL_GROWTH | 110 | 2.034831 | 0.0076157 | 0.0060085 |
| GOBP_NUCLEOSIDE_TRIPHOSPHATE_BIOSYNTHETIC_PROCESS | 30 | -2.329544 | 0.0081928 | 0.0064638 |
| GOBP_RESPONSE_TO_FIBROBLAST_GROWTH_FACTOR | 19 | 2.241322 | 0.0085622 | 0.0067552 |
| GOBP_RESPONSE_TO_OXYGEN_LEVELS | 63 | 2.098544 | 0.0085622 | 0.0067552 |
| GOBP_NEGATIVE_REGULATION_OF_LOCOMOTION | 51 | 2.164564 | 0.0096556 | 0.0076179 |
| GOBP_AEROBIC_RESPIRATION | 77 | -2.125256 | 0.0098415 | 0.0077645 |
| GOBP_EMBRYONIC_ORGAN_DEVELOPMENT | 55 | 2.119014 | 0.0098494 | 0.0077708 |
| GOBP_RESPONSE_TO_LIPID | 134 | 1.944070 | 0.0098564 | 0.0077763 |
| GOBP_RIBONUCLEOSIDE_TRIPHOSPHATE_METABOLIC_PROCESS | 32 | -2.316863 | 0.0107256 | 0.0084620 |
| GOBP_SENSORY_ORGAN_MORPHOGENESIS | 28 | 2.278581 | 0.0107256 | 0.0084620 |
| GOBP_ADENYLATE_CYCLASE_MODULATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY | 20 | 2.216234 | 0.0107256 | 0.0084620 |
| GOBP_EMBRYONIC_MORPHOGENESIS | 85 | 2.023220 | 0.0107256 | 0.0084620 |
| GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION | 54 | 2.112190 | 0.0111095 | 0.0087649 |
| GOBP_EMBRYONIC_ORGAN_MORPHOGENESIS | 32 | 2.171257 | 0.0114465 | 0.0090308 |
| GOBP_RHYTHMIC_PROCESS | 51 | 2.134794 | 0.0114465 | 0.0090308 |
| GOBP_RAS_PROTEIN_SIGNAL_TRANSDUCTION | 74 | 2.061603 | 0.0114465 | 0.0090308 |
| GOBP_RIBONUCLEOSIDE_TRIPHOSPHATE_BIOSYNTHETIC_PROCESS | 29 | -2.361446 | 0.0115075 | 0.0090789 |
| GOBP_DIGESTIVE_SYSTEM_DEVELOPMENT | 14 | 2.191860 | 0.0115075 | 0.0090789 |
| GOBP_MESENCHYME_DEVELOPMENT | 39 | 2.187010 | 0.0115075 | 0.0090789 |
| GOBP_TRANSFORMING_GROWTH_FACTOR_BETA_RECEPTOR_SIGNALING_PATHWAY | 35 | 2.123161 | 0.0115075 | 0.0090789 |
| GOBP_INFLAMMATORY_RESPONSE | 107 | 2.020555 | 0.0115075 | 0.0090789 |
| GOBP_BIOLOGICAL_ADHESION | 175 | 1.844718 | 0.0115075 | 0.0090789 |
| GOBP_ADENYLATE_CYCLASE_ACTIVATING_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY | 13 | 2.174923 | 0.0130184 | 0.0102709 |
| GOBP_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND | 150 | 1.924459 | 0.0130184 | 0.0102709 |
| GOBP_CYTOCHROME_COMPLEX_ASSEMBLY | 13 | -2.217064 | 0.0133335 | 0.0105196 |
| GOBP_MORPHOGENESIS_OF_A_BRANCHING_STRUCTURE | 20 | 2.176893 | 0.0133409 | 0.0105254 |
| GOBP_CHEMICAL_HOMEOSTASIS | 179 | 1.855274 | 0.0139790 | 0.0110289 |
| GOBP_REGULATION_OF_VASCULATURE_DEVELOPMENT | 47 | 2.114343 | 0.0139816 | 0.0110309 |
| GOBP_REGULATION_OF_IMMUNE_SYSTEM_PROCESS | 228 | 1.760676 | 0.0139816 | 0.0110309 |
| GOBP_SENSORY_ORGAN_DEVELOPMENT | 70 | 2.076031 | 0.0140503 | 0.0110850 |
| GOBP_EXPORT_FROM_CELL | 124 | 1.913804 | 0.0143056 | 0.0112865 |
| GOBP_HOMEOSTASIS_OF_NUMBER_OF_CELLS | 62 | 2.069664 | 0.0144477 | 0.0113986 |
| GOBP_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_VIA_DEATH_DOMAIN_RECEPTORS | 20 | 2.150462 | 0.0146955 | 0.0115941 |
| GOBP_REGULATION_OF_CELL_DEATH | 306 | 1.756754 | 0.0146955 | 0.0115941 |
| GOBP_REGULATION_OF_CELL_ADHESION | 116 | 1.908772 | 0.0153883 | 0.0121407 |
| GOBP_HEART_GROWTH | 16 | 2.133024 | 0.0156370 | 0.0123369 |
| GOBP_ENDOTHELIAL_CELL_APOPTOTIC_PROCESS | 12 | 2.118619 | 0.0156370 | 0.0123369 |
| GOBP_EPIDERMIS_DEVELOPMENT | 44 | 2.095777 | 0.0156370 | 0.0123369 |
| GOBP_CELLULAR_RESPONSE_TO_HORMONE_STIMULUS | 115 | 1.952485 | 0.0156370 | 0.0123369 |
| GOBP_RESPONSE_TO_MOLECULE_OF_BACTERIAL_ORIGIN | 43 | 2.067215 | 0.0158973 | 0.0125423 |
| GOBP_GROWTH | 175 | 1.802069 | 0.0158973 | 0.0125423 |
| GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS | 46 | 2.091458 | 0.0163778 | 0.0129214 |
| GOBP_PROTON_TRANSMEMBRANE_TRANSPORT | 39 | -2.108023 | 0.0167593 | 0.0132224 |
| GOBP_EPITHELIAL_CELL_DIFFERENTIATION | 94 | 1.927618 | 0.0168255 | 0.0132746 |
| GOBP_CELLULAR_RESPIRATION | 82 | -2.005384 | 0.0171230 | 0.0135093 |
| GOBP_IMMUNE_SYSTEM_DEVELOPMENT | 180 | 1.767938 | 0.0171767 | 0.0135517 |
| GOBP_POSITIVE_REGULATION_OF_LOCOMOTION | 94 | 1.900456 | 0.0207496 | 0.0163706 |
| GOBP_DEFENSE_RESPONSE_TO_GRAM_NEGATIVE_BACTERIUM | 11 | -2.223246 | 0.0209281 | 0.0165114 |
| GOBP_CELLULAR_RESPONSE_TO_KETONE | 20 | 2.096691 | 0.0214635 | 0.0169338 |
| GOBP_REGIONALIZATION | 39 | 2.068977 | 0.0214635 | 0.0169338 |
| GOBP_CYTOKINE_PRODUCTION | 126 | 1.894348 | 0.0214635 | 0.0169338 |
| GOBP_RESPONSE_TO_CAMP | 11 | 2.058877 | 0.0225297 | 0.0177749 |
| GOBP_SENSORY_SYSTEM_DEVELOPMENT | 53 | 2.041380 | 0.0226019 | 0.0178319 |
| GOBP_CELLULAR_RESPONSE_TO_OXYGEN_LEVELS | 39 | 2.055959 | 0.0227282 | 0.0179316 |
| GOBP_INTRACELLULAR_RECEPTOR_SIGNALING_PATHWAY | 50 | 2.053141 | 0.0228639 | 0.0180386 |
| GOBP_EPITHELIUM_DEVELOPMENT | 159 | 1.834185 | 0.0232388 | 0.0183344 |
| GOBP_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION | 333 | 1.631406 | 0.0240709 | 0.0189909 |
| GOBP_REGULATION_OF_LEUKOCYTE_CHEMOTAXIS | 19 | 2.065050 | 0.0249561 | 0.0196893 |
| GOBP_NEURON_DEVELOPMENT | 160 | 1.803507 | 0.0249561 | 0.0196893 |
| GOBP_RESPONSE_TO_TRANSFORMING_GROWTH_FACTOR_BETA | 44 | 2.039957 | 0.0253374 | 0.0199901 |
| GOBP_NEGATIVE_REGULATION_OF_MAPK_CASCADE | 40 | 2.056382 | 0.0264017 | 0.0208298 |
| GOBP_PATTERN_SPECIFICATION_PROCESS | 51 | 2.016379 | 0.0270716 | 0.0213583 |
| GOBP_NEGATIVE_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS | 15 | 2.022966 | 0.0279726 | 0.0220691 |
| GOBP_CELL_CELL_SIGNALING | 204 | 1.713399 | 0.0288796 | 0.0227848 |
| GOBP_NUCLEOSIDE_TRIPHOSPHATE_METABOLIC_PROCESS | 35 | -2.145032 | 0.0290952 | 0.0229549 |
| GOBP_LEUKOCYTE_HOMEOSTASIS | 19 | 2.031926 | 0.0300296 | 0.0236920 |
| GOBP_MITOCHONDRIAL_TRANSLATION | 28 | -2.153952 | 0.0314673 | 0.0248264 |
| GOBP_PATTERN_RECOGNITION_RECEPTOR_SIGNALING_PATHWAY | 36 | 2.002859 | 0.0321402 | 0.0253573 |
| GOBP_REGULATION_OF_EPITHELIAL_CELL_APOPTOTIC_PROCESS | 17 | 2.066857 | 0.0322741 | 0.0254629 |
| GOBP_REGULATION_OF_HEART_GROWTH | 12 | 2.028399 | 0.0322741 | 0.0254629 |
| GOBP_ATP_METABOLIC_PROCESS | 91 | -1.977307 | 0.0328156 | 0.0258901 |
| GOBP_CONNECTIVE_TISSUE_DEVELOPMENT | 37 | 2.058157 | 0.0331431 | 0.0261485 |
| GOBP_MULTI_MULTICELLULAR_ORGANISM_PROCESS | 32 | 1.999619 | 0.0331431 | 0.0261485 |
| GOBP_RESPONSE_TO_NITROGEN_COMPOUND | 213 | 1.699730 | 0.0340649 | 0.0268758 |
| GOBP_REGULATION_OF_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY_VIA_DEATH_DOMAIN_RECEPTORS | 14 | 2.040740 | 0.0352226 | 0.0277891 |
| GOBP_POSITIVE_REGULATION_OF_VASCULATURE_DEVELOPMENT | 26 | 2.039691 | 0.0360148 | 0.0284141 |
| GOBP_CENTRAL_NERVOUS_SYSTEM_NEURON_DIFFERENTIATION | 23 | 2.025104 | 0.0363706 | 0.0286948 |
| GOBP_RETINA_DEVELOPMENT_IN_CAMERA_TYPE_EYE | 18 | 2.081100 | 0.0372410 | 0.0293815 |
| GOBP_MATERNAL_PLACENTA_DEVELOPMENT | 10 | 2.001191 | 0.0372410 | 0.0293815 |
| GOBP_CELL_MORPHOGENESIS | 154 | 1.755610 | 0.0376459 | 0.0297010 |
| GOBP_MUSCLE_CELL_PROLIFERATION | 36 | 1.970601 | 0.0384788 | 0.0303581 |
| GOBP_RESPONSE_TO_STEROID_HORMONE | 59 | 1.950172 | 0.0384788 | 0.0303581 |
| GOBP_MATERNAL_PROCESS_INVOLVED_IN_FEMALE_PREGNANCY | 13 | 2.008132 | 0.0393505 | 0.0310458 |
| GOBP_PLACENTA_DEVELOPMENT | 27 | 1.999498 | 0.0393505 | 0.0310458 |
| GOBP_SULFUR_COMPOUND_BIOSYNTHETIC_PROCESS | 34 | 1.974925 | 0.0393505 | 0.0310458 |
| GOBP_MITOCHONDRIAL_ATP_SYNTHESIS_COUPLED_PROTON_TRANSPORT | 10 | -2.148456 | 0.0393984 | 0.0310837 |
| GOBP_CELLULAR_RESPONSE_TO_STEROID_HORMONE_STIMULUS | 42 | 1.996336 | 0.0393984 | 0.0310837 |
| GOBP_EYE_MORPHOGENESIS | 20 | 1.992658 | 0.0393984 | 0.0310837 |
| GOBP_RECEPTOR_MEDIATED_ENDOCYTOSIS | 44 | 1.970763 | 0.0393984 | 0.0310837 |
| GOBP_REGULATION_OF_ORGAN_GROWTH | 17 | 1.953771 | 0.0393984 | 0.0310837 |
| GOBP_MUSCLE_TISSUE_DEVELOPMENT | 66 | 1.909303 | 0.0393984 | 0.0310837 |
| GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS | 21 | 1.990288 | 0.0396561 | 0.0312869 |
| GOBP_NEGATIVE_REGULATION_OF_PROTEIN_SERINE_THREONINE_KINASE_ACTIVITY | 34 | 1.944833 | 0.0396561 | 0.0312869 |
| GOBP_CELLULAR_RESPONSE_TO_CHEMICAL_STRESS | 75 | 1.905193 | 0.0396561 | 0.0312869 |
| GOBP_FORMATION_OF_PRIMARY_GERM_LAYER | 14 | 1.991396 | 0.0402474 | 0.0317535 |
| GOBP_MYELOID_CELL_HOMEOSTASIS | 42 | 1.934260 | 0.0402474 | 0.0317535 |
| GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND | 194 | 1.667811 | 0.0402474 | 0.0317535 |
| GOBP_CAMERA_TYPE_EYE_MORPHOGENESIS | 17 | 1.944979 | 0.0431860 | 0.0340719 |
| GOBP_REGULATION_OF_SECRETION | 85 | 1.871521 | 0.0431860 | 0.0340719 |
| GOBP_MITOCHONDRION_ORGANIZATION | 155 | -1.626760 | 0.0434095 | 0.0342482 |
| GOBP_TISSUE_MORPHOGENESIS | 74 | 1.902908 | 0.0446767 | 0.0352480 |
| GOBP_CELLULAR_RESPONSE_TO_ALCOHOL | 14 | 1.967098 | 0.0451459 | 0.0356182 |
| GOBP_TISSUE_REMODELING | 19 | 1.971774 | 0.0455033 | 0.0359001 |
| GOBP_EPITHELIAL_CELL_APOPTOTIC_PROCESS | 26 | 1.993013 | 0.0464340 | 0.0366344 |
| GOBP_NEGATIVE_REGULATION_OF_NEURON_DIFFERENTIATION | 14 | 1.964644 | 0.0464340 | 0.0366344 |
| GOBP_REGULATION_OF_TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_SIGNALING_PATHWAY | 43 | 1.913018 | 0.0464340 | 0.0366344 |
| GOBP_REGULATION_OF_WNT_SIGNALING_PATHWAY | 55 | 1.865320 | 0.0464340 | 0.0366344 |
| GOBP_REGENERATION | 27 | 1.928821 | 0.0465573 | 0.0367317 |
| GOBP_CIRCADIAN_RHYTHM | 40 | 1.919541 | 0.0479845 | 0.0378577 |
| GOBP_POSITIVE_REGULATION_OF_CELL_DEATH | 107 | 1.776629 | 0.0494123 | 0.0389842 |
| GOBP_CELL_CELL_ADHESION | 107 | 1.771984 | 0.0494123 | 0.0389842 |
| GOBP_REPRODUCTIVE_SYSTEM_DEVELOPMENT | 81 | 1.853856 | 0.0496882 | 0.0392019 |
| GOBP_MUCOPOLYSACCHARIDE_METABOLIC_PROCESS | 13 | 1.939632 | 0.0497603 | 0.0392587 |
| GOBP_INSULIN_SECRETION_INVOLVED_IN_CELLULAR_RESPONSE_TO_GLUCOSE_STIMULUS | 13 | 1.937878 | 0.0497603 | 0.0392587 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| GOMF_STRUCTURAL_CONSTITUENT_OF_RIBOSOME | 87 | -3.387282 | 0.0000000 | 0.0000000 |
| GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NAD_P_H_QUINONE_OR_SIMILAR_COMPOUND_AS_ACCEPTOR | 26 | -2.950293 | 0.0000243 | 0.0000209 |
| GOMF_OXIDOREDUCTION_DRIVEN_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 35 | -2.877268 | 0.0000311 | 0.0000268 |
| GOMF_NADH_DEHYDROGENASE_ACTIVITY | 23 | -2.831990 | 0.0001776 | 0.0001530 |
| GOMF_DNA_BINDING_TRANSCRIPTION_ACTIVATOR_ACTIVITY | 74 | 2.412904 | 0.0001776 | 0.0001530 |
| GOMF_CIS_REGULATORY_REGION_SEQUENCE_SPECIFIC_DNA_BINDING | 173 | 2.182237 | 0.0001776 | 0.0001530 |
| GOMF_DNA_BINDING_TRANSCRIPTION_FACTOR_ACTIVITY | 183 | 2.164475 | 0.0001776 | 0.0001530 |
| GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_NAD_P_H | 30 | -2.753930 | 0.0001800 | 0.0001551 |
| GOMF_SEQUENCE_SPECIFIC_DNA_BINDING | 276 | 2.046593 | 0.0001800 | 0.0001551 |
| GOMF_ELECTRON_TRANSFER_ACTIVITY | 49 | -2.594089 | 0.0003521 | 0.0003033 |
| GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY | 304 | 1.954948 | 0.0003521 | 0.0003033 |
| GOMF_STRUCTURAL_MOLECULE_ACTIVITY | 136 | -2.226044 | 0.0004210 | 0.0003627 |
| GOMF_TRANSPORTER_ACTIVITY | 167 | -1.962410 | 0.0014546 | 0.0012532 |
| GOMF_PRIMARY_ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 48 | -2.275777 | 0.0082735 | 0.0071279 |
| GOMF_PASSIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY | 33 | -2.026467 | 0.0351792 | 0.0303079 |
| GOMF_KINASE_BINDING | 180 | 1.745293 | 0.0476930 | 0.0410889 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| REACTOME_TRANSLATION | 133 | -2.636206 | 0.0000057 | 0.0000052 |
| REACTOME_EUKARYOTIC_TRANSLATION_ELONGATION | 54 | -2.767540 | 0.0001538 | 0.0001423 |
| REACTOME_RESPIRATORY_ELECTRON_TRANSPORT_ATP_SYNTHESIS_BY_CHEMIOSMOTIC_COUPLING_AND_HEAT_PRODUCTION_BY_UNCOUPLING_PROTEINS | 63 | -2.711163 | 0.0001538 | 0.0001423 |
| REACTOME_INFLUENZA_INFECTION | 72 | -2.517822 | 0.0002163 | 0.0002002 |
| REACTOME_REGULATION_OF_EXPRESSION_OF_SLITS_AND_ROBOS | 85 | -2.516039 | 0.0002167 | 0.0002006 |
| REACTOME_MITOCHONDRIAL_TRANSLATION | 41 | -2.771394 | 0.0002305 | 0.0002133 |
| REACTOME_COMPLEX_I_BIOGENESIS | 27 | -2.759535 | 0.0002305 | 0.0002133 |
| REACTOME_SRP_DEPENDENT_COTRANSLATIONAL_PROTEIN_TARGETING_TO_MEMBRANE | 62 | -2.550541 | 0.0002305 | 0.0002133 |
| REACTOME_RESPONSE_OF_EIF2AK4_GCN2_TO_AMINO_ACID_DEFICIENCY | 57 | -2.433269 | 0.0010015 | 0.0009268 |
| REACTOME_CELLULAR_RESPONSE_TO_STARVATION | 73 | -2.330032 | 0.0029225 | 0.0027045 |
| REACTOME_RESPIRATORY_ELECTRON_TRANSPORT | 51 | -2.414203 | 0.0030033 | 0.0027793 |
| REACTOME_RRNA_PROCESSING | 102 | -2.167609 | 0.0030033 | 0.0027793 |
| REACTOME_THE_CITRIC_ACID_TCA_CYCLE_AND_RESPIRATORY_ELECTRON_TRANSPORT | 77 | -2.252786 | 0.0033264 | 0.0030782 |
| REACTOME_SELENOAMINO_ACID_METABOLISM | 58 | -2.255485 | 0.0074161 | 0.0068628 |
| REACTOME_EUKARYOTIC_TRANSLATION_INITIATION | 65 | -2.236839 | 0.0077476 | 0.0071696 |
| REACTOME_NONSENSE_MEDIATED_DECAY_NMD | 64 | -2.140318 | 0.0094670 | 0.0087607 |
| REACTOME_TOLL_LIKE_RECEPTOR_CASCADES | 30 | 2.209072 | 0.0108511 | 0.0100415 |
| REACTOME_SIGNALING_BY_ROBO_RECEPTORS | 94 | -2.047394 | 0.0116495 | 0.0107803 |
| ID | setSize | NES | p.adjust | qvalue |
|---|---|---|---|---|
| WP_OXIDATIVE_PHOSPHORYLATION | 34 | -3.032978 | 0.0000070 | 0.0000056 |
| WP_ELECTRON_TRANSPORT_CHAIN_OXPHOS_SYSTEM_IN_MITOCHONDRIA | 57 | -2.836425 | 0.0000070 | 0.0000056 |
| WP_MITOCHONDRIAL_COMPLEX_I_ASSEMBLY_MODEL_OXPHOS_SYSTEM | 27 | -2.735064 | 0.0003258 | 0.0002629 |
| WP_CYTOPLASMIC_RIBOSOMAL_PROTEINS | 53 | -2.623085 | 0.0003258 | 0.0002629 |
| WP_SUDDEN_INFANT_DEATH_SYNDROME_SIDS_SUSCEPTIBILITY_PATHWAYS | 27 | 2.553020 | 0.0003258 | 0.0002629 |
| WP_GLUCOCORTICOID_RECEPTOR_PATHWAY | 19 | 2.254725 | 0.0106467 | 0.0085904 |
| WP_CIRCADIAN_RHYTHM_GENES | 41 | 2.154513 | 0.0106467 | 0.0085904 |
| WP_OREXIN_RECEPTOR_PATHWAY | 24 | 2.177890 | 0.0204809 | 0.0165253 |
| WP_ARYL_HYDROCARBON_RECEPTOR_PATHWAY_WP2586 | 27 | 2.166997 | 0.0204809 | 0.0165253 |
| WP_HEPATITIS_B_INFECTION | 40 | 2.018225 | 0.0338204 | 0.0272884 |
| WP_NEOVASCULARISATION_PROCESSES | 10 | 2.036257 | 0.0342356 | 0.0276234 |
| WP_NUCLEAR_RECEPTORS_METAPATHWAY | 66 | 1.975659 | 0.0350283 | 0.0282631 |
| WP_VEGFAVEGFR2_SIGNALING_PATHWAY | 133 | 1.838130 | 0.0350283 | 0.0282631 |
| WP_BASE_EXCISION_REPAIR | 13 | -2.086275 | 0.0478118 | 0.0385776 |
| WP_COMPLEMENT_SYSTEM_IN_NEURONAL_DEVELOPMENT_AND_PLASTICITY | 14 | 2.021052 | 0.0478118 | 0.0385776 |
| WP_IL1_SIGNALING_PATHWAY | 17 | 1.993349 | 0.0478118 | 0.0385776 |
Highlight on the volcano plot of the genes found to be implicated in the endoplasmic reticulum unfolded protein response + table
| gene | log2FoldChange | padj | description |
|---|---|---|---|
| RAB8B | 1.3082949 | 0.0000000 | RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30273] |
| TAPBP | -0.7495563 | 0.0000000 | TAP binding protein [Source:HGNC Symbol;Acc:HGNC:11566] |
| RAB35 | 0.9675892 | 0.0000000 | RAB35, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9774] |
| LNPEP | 1.1727759 | 0.0000000 | leucyl and cystinyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:6656] |
| ARL8B | 0.7914131 | 0.0000000 | ADP ribosylation factor like GTPase 8B [Source:HGNC Symbol;Acc:HGNC:25564] |
| PIKFYVE | 0.8594568 | 0.0000001 | phosphoinositide kinase, FYVE-type zinc finger containing [Source:HGNC Symbol;Acc:HGNC:23785] |
| B2M | 0.8496441 | 0.0000001 | beta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914] |
| HLA-A | -0.8742236 | 0.0000003 | major histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:HGNC:4931] |
| CTSD | -0.6241187 | 0.0000027 | cathepsin D [Source:HGNC Symbol;Acc:HGNC:2529] |
| ERAP2 | -0.8017025 | 0.0000048 | endoplasmic reticulum aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:29499] |
| RAB33A | 1.3929028 | 0.0000133 | RAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773] |
| RAB6A | 0.5461231 | 0.0000417 | RAB6A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9786] |
| MICA | -0.6871788 | 0.0000464 | MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090] |
| FCGR1A | -1.0134651 | 0.0001062 | Fc gamma receptor Ia [Source:HGNC Symbol;Acc:HGNC:3613] |
| AP3B1 | 0.7257227 | 0.0002469 | adaptor related protein complex 3 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:566] |
| HLA-B | 0.5741303 | 0.0002662 | major histocompatibility complex, class I, B [Source:HGNC Symbol;Acc:HGNC:4932] |
| WDFY4 | 0.7758152 | 0.0002878 | WDFY family member 4 [Source:HGNC Symbol;Acc:HGNC:29323] |
| ERAP1 | 0.5559485 | 0.0005007 | endoplasmic reticulum aminopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:18173] |
| MARCHF1 | 1.0198236 | 0.0005036 | membrane associated ring-CH-type finger 1 [Source:HGNC Symbol;Acc:HGNC:26077] |
Highlight on the volcano plot of the genes found to be implicated in the endoplasmic reticulum unfolded protein response + table
| gene | log2FoldChange | padj | description |
|---|---|---|---|
| PIK3R1 | 1.7581776 | 0.0000000 | phosphoinositide-3-kinase regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:8979] |
| EIF2A | 1.3500520 | 0.0000000 | eukaryotic translation initiation factor 2A [Source:HGNC Symbol;Acc:HGNC:3254] |
| CREBRF | 3.1055803 | 0.0000000 | CREB3 regulatory factor [Source:HGNC Symbol;Acc:HGNC:24050] |
| PARP6 | -1.1134644 | 0.0000000 | poly(ADP-ribose) polymerase family member 6 [Source:HGNC Symbol;Acc:HGNC:26921] |
| ERLEC1 | 1.0245015 | 0.0000000 | endoplasmic reticulum lectin 1 [Source:HGNC Symbol;Acc:HGNC:25222] |
| PTPN1 | 0.8693226 | 0.0000000 | protein tyrosine phosphatase non-receptor type 1 [Source:HGNC Symbol;Acc:HGNC:9642] |
| NFE2L2 | 1.1058788 | 0.0000000 | NFE2 like bZIP transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:7782] |
| ATF6 | 0.8184572 | 0.0000000 | activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791] |
| HERPUD2 | 1.0629782 | 0.0000000 | HERPUD family member 2 [Source:HGNC Symbol;Acc:HGNC:21915] |
| FICD | -1.6827931 | 0.0000000 | FIC domain protein adenylyltransferase [Source:HGNC Symbol;Acc:HGNC:18416] |
| CDK5RAP3 | -1.0683387 | 0.0000000 | CDK5 regulatory subunit associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18673] |
| TMED2 | 0.8504556 | 0.0000000 | transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996] |
| PDIA6 | 1.9605974 | 0.0000000 | protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168] |
| XBP1 | 0.6022125 | 0.0000000 | X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801] |
| STC2 | 1.4415016 | 0.0000000 | stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374] |
| OS9 | -0.5082912 | 0.0000034 | OS9 endoplasmic reticulum lectin [Source:HGNC Symbol;Acc:HGNC:16994] |
| DERL1 | 0.6513517 | 0.0000142 | derlin 1 [Source:HGNC Symbol;Acc:HGNC:28454] |
| NCK1 | 0.9972591 | 0.0001843 | NCK adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:7664] |
| PARP16 | 0.7732122 | 0.0004586 | poly(ADP-ribose) polymerase family member 16 [Source:HGNC Symbol;Acc:HGNC:26040] |
| BAK1 | 0.8462247 | 0.0006944 | BCL2 antagonist/killer 1 [Source:HGNC Symbol;Acc:HGNC:949] |
| ATF3 | 2.6025934 | 0.0006979 | activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785] |
Highlight on the volcano plot of the genes found to be implicated in redox + table
| gene | log2FoldChange | padj | description |
|---|---|---|---|
| SQLE | 1.9677248 | 0.0000000 | squalene epoxidase [Source:HGNC Symbol;Acc:HGNC:11279] |
| P4HA1 | 2.1343453 | 0.0000000 | prolyl 4-hydroxylase subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8546] |
| FTH1 | 2.4058219 | 0.0000000 | ferritin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:3976] |
| HSD17B12 | 1.7505653 | 0.0000000 | hydroxysteroid 17-beta dehydrogenase 12 [Source:HGNC Symbol;Acc:HGNC:18646] |
| MTHFD2 | 1.5396345 | 0.0000000 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434] |
| NDUFB7 | -1.4252231 | 0.0000000 | NADH:ubiquinone oxidoreductase subunit B7 [Source:HGNC Symbol;Acc:HGNC:7702] |
| ETFB | -1.4254615 | 0.0000000 | electron transfer flavoprotein subunit beta [Source:HGNC Symbol;Acc:HGNC:3482] |
| HMGCR | 1.4755899 | 0.0000000 | 3-hydroxy-3-methylglutaryl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:5006] |
| OXR1 | 1.3412659 | 0.0000000 | oxidation resistance 1 [Source:HGNC Symbol;Acc:HGNC:15822] |
| FADS2 | 1.1211500 | 0.0000000 | fatty acid desaturase 2 [Source:HGNC Symbol;Acc:HGNC:3575] |
| NDUFS3 | -1.0606974 | 0.0000000 | NADH:ubiquinone oxidoreductase core subunit S3 [Source:HGNC Symbol;Acc:HGNC:7710] |
| DCXR | -1.2800469 | 0.0000000 | dicarbonyl and L-xylulose reductase [Source:HGNC Symbol;Acc:HGNC:18985] |
| PRDX3 | 1.8944825 | 0.0000000 | peroxiredoxin 3 [Source:HGNC Symbol;Acc:HGNC:9354] |
| EGLN1 | 1.3891164 | 0.0000000 | egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232] |
| KDM6A | 1.5498310 | 0.0000000 | lysine demethylase 6A [Source:HGNC Symbol;Acc:HGNC:12637] |
| SDHC | 1.9322141 | 0.0000000 | succinate dehydrogenase complex subunit C [Source:HGNC Symbol;Acc:HGNC:10682] |
| PGK1 | 0.8930287 | 0.0000000 | phosphoglycerate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8896] |
| KDM1A | 1.1143569 | 0.0000000 | lysine demethylase 1A [Source:HGNC Symbol;Acc:HGNC:29079] |
| ME2 | 0.9344287 | 0.0000000 | malic enzyme 2 [Source:HGNC Symbol;Acc:HGNC:6984] |
| ETFA | 1.0265180 | 0.0000000 | electron transfer flavoprotein subunit alpha [Source:HGNC Symbol;Acc:HGNC:3481] |
| APEX1 | 1.1827315 | 0.0000000 | apurinic/apyrimidinic endodeoxyribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:587] |
| VKORC1 | -1.1002662 | 0.0000000 | vitamin K epoxide reductase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23663] |
| GSTP1 | -1.0910152 | 0.0000000 | glutathione S-transferase pi 1 [Source:HGNC Symbol;Acc:HGNC:4638] |
| CTBP1 | -1.0333567 | 0.0000000 | C-terminal binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2494] |
| CAT | 1.4384963 | 0.0000000 | catalase [Source:HGNC Symbol;Acc:HGNC:1516] |
| HIBADH | 1.2310410 | 0.0000000 | 3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4907] |
| GAPDH | 1.3157875 | 0.0000000 | glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141] |
| ALKBH6 | -1.2975631 | 0.0000000 | alkB homolog 6 [Source:HGNC Symbol;Acc:HGNC:28243] |
| DHRS4 | -1.1106634 | 0.0000000 | dehydrogenase/reductase 4 [Source:HGNC Symbol;Acc:HGNC:16985] |
| IDH3G | -1.0185032 | 0.0000000 | isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma [Source:HGNC Symbol;Acc:HGNC:5386] |
| BLVRA | -0.9486439 | 0.0000000 | biliverdin reductase A [Source:HGNC Symbol;Acc:HGNC:1062] |
| NDUFV2 | -0.7017629 | 0.0000000 | NADH:ubiquinone oxidoreductase core subunit V2 [Source:HGNC Symbol;Acc:HGNC:7717] |
| MTRR | 0.9186923 | 0.0000000 | 5-methyltetrahydrofolate-homocysteine methyltransferase reductase [Source:HGNC Symbol;Acc:HGNC:7473] |
| KDM8 | -1.8486404 | 0.0000000 | lysine demethylase 8 [Source:HGNC Symbol;Acc:HGNC:25840] |
| PRDX6 | -0.7177835 | 0.0000000 | peroxiredoxin 6 [Source:HGNC Symbol;Acc:HGNC:16753] |
| SUCLG2 | 1.4056385 | 0.0000000 | succinate-CoA ligase GDP-forming subunit beta [Source:HGNC Symbol;Acc:HGNC:11450] |
| ALKBH2 | -0.9275942 | 0.0000000 | alkB homolog 2, alpha-ketoglutarate dependent dioxygenase [Source:HGNC Symbol;Acc:HGNC:32487] |
| ACADM | 1.3279639 | 0.0000000 | acyl-CoA dehydrogenase medium chain [Source:HGNC Symbol;Acc:HGNC:89] |
| TXNRD1 | 0.8457012 | 0.0000000 | thioredoxin reductase 1 [Source:HGNC Symbol;Acc:HGNC:12437] |
| TET2 | 1.1333118 | 0.0000000 | tet methylcytosine dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:25941] |
| COX6A1 | -0.7093131 | 0.0000000 | cytochrome c oxidase subunit 6A1 [Source:HGNC Symbol;Acc:HGNC:2277] |
| CYBA | -0.8773041 | 0.0000000 | cytochrome b-245 alpha chain [Source:HGNC Symbol;Acc:HGNC:2577] |
| FADS1 | 0.7865193 | 0.0000000 | fatty acid desaturase 1 [Source:HGNC Symbol;Acc:HGNC:3574] |
| RSBN1 | 1.0267703 | 0.0000000 | round spermatid basic protein 1 [Source:HGNC Symbol;Acc:HGNC:25642] |
| DOHH | -1.0181291 | 0.0000000 | deoxyhypusine hydroxylase [Source:HGNC Symbol;Acc:HGNC:28662] |
| MT-ND4 | -1.2299276 | 0.0000000 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 [Source:HGNC Symbol;Acc:HGNC:7459] |
| DLAT | 1.4189656 | 0.0000000 | dihydrolipoamide S-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2896] |
| PRDX5 | -0.7099264 | 0.0000000 | peroxiredoxin 5 [Source:HGNC Symbol;Acc:HGNC:9355] |
| ALKBH4 | -1.3700749 | 0.0000000 | alkB homolog 4, lysine demethylase [Source:HGNC Symbol;Acc:HGNC:21900] |
| MT-CO3 | -1.0495328 | 0.0000000 | mitochondrially encoded cytochrome c oxidase III [Source:HGNC Symbol;Acc:HGNC:7422] |
| DHRS7 | 1.2230127 | 0.0000000 | dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524] |
| TXNL1 | 0.6806108 | 0.0000000 | thioredoxin like 1 [Source:HGNC Symbol;Acc:HGNC:12436] |
| KDM1B | 1.5109702 | 0.0000000 | lysine demethylase 1B [Source:HGNC Symbol;Acc:HGNC:21577] |
| ENOX2 | 1.7889257 | 0.0000000 | ecto-NOX disulfide-thiol exchanger 2 [Source:HGNC Symbol;Acc:HGNC:2259] |
| BCKDHB | 1.3993568 | 0.0000000 | branched chain keto acid dehydrogenase E1 subunit beta [Source:HGNC Symbol;Acc:HGNC:987] |
| PDIA6 | 1.9605974 | 0.0000000 | protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168] |
| ALDH16A1 | -0.8634164 | 0.0000000 | aldehyde dehydrogenase 16 family member A1 [Source:HGNC Symbol;Acc:HGNC:28114] |
| RRM2B | 1.1083692 | 0.0000000 | ribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296] |
| HPDL | -1.0528315 | 0.0000000 | 4-hydroxyphenylpyruvate dioxygenase like [Source:HGNC Symbol;Acc:HGNC:28242] |
| GFUS | -0.9644788 | 0.0000000 | GDP-L-fucose synthase [Source:HGNC Symbol;Acc:HGNC:12390] |
| TXNDC5 | 0.9816462 | 0.0000001 | thioredoxin domain containing 5 [Source:HGNC Symbol;Acc:HGNC:21073] |
| MT-CO2 | -1.0311870 | 0.0000001 | mitochondrially encoded cytochrome c oxidase II [Source:HGNC Symbol;Acc:HGNC:7421] |
| L2HGDH | 1.0615049 | 0.0000001 | L-2-hydroxyglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:20499] |
| MSRB3 | 0.7589829 | 0.0000001 | methionine sulfoxide reductase B3 [Source:HGNC Symbol;Acc:HGNC:27375] |
| NDUFS8 | -0.8497261 | 0.0000001 | NADH:ubiquinone oxidoreductase core subunit S8 [Source:HGNC Symbol;Acc:HGNC:7715] |
| ALDH6A1 | 1.0998006 | 0.0000002 | aldehyde dehydrogenase 6 family member A1 [Source:HGNC Symbol;Acc:HGNC:7179] |
| KDSR | 0.5683562 | 0.0000005 | 3-ketodihydrosphingosine reductase [Source:HGNC Symbol;Acc:HGNC:4021] |
| ACADVL | -0.6128132 | 0.0000005 | acyl-CoA dehydrogenase very long chain [Source:HGNC Symbol;Acc:HGNC:92] |
| MGST2 | -0.8752367 | 0.0000006 | microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063] |
| PCBD2 | -0.8282777 | 0.0000006 | pterin-4 alpha-carbinolamine dehydratase 2 [Source:HGNC Symbol;Acc:HGNC:24474] |
| COX5A | 1.0745872 | 0.0000007 | cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267] |
| RIOX1 | -0.9372983 | 0.0000011 | ribosomal oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:20968] |
| NDUFA2 | -1.1354351 | 0.0000012 | NADH:ubiquinone oxidoreductase subunit A2 [Source:HGNC Symbol;Acc:HGNC:7685] |
| ALDH1B1 | -0.8223101 | 0.0000018 | aldehyde dehydrogenase 1 family member B1 [Source:HGNC Symbol;Acc:HGNC:407] |
| GPX4 | -0.5629846 | 0.0000018 | glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556] |
| AOC3 | 2.0065628 | 0.0000019 | amine oxidase copper containing 3 [Source:HGNC Symbol;Acc:HGNC:550] |
| SC5D | 0.7047703 | 0.0000036 | sterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547] |
| NDUFV1 | -0.5988942 | 0.0000039 | NADH:ubiquinone oxidoreductase core subunit V1 [Source:HGNC Symbol;Acc:HGNC:7716] |
| COX7A2 | 0.8957250 | 0.0000046 | cytochrome c oxidase subunit 7A2 [Source:HGNC Symbol;Acc:HGNC:2288] |
| DUS1L | -0.5876339 | 0.0000068 | dihydrouridine synthase 1 like [Source:HGNC Symbol;Acc:HGNC:30086] |
| OGDH | 0.8376095 | 0.0000075 | oxoglutarate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:8124] |
| AKR1A1 | -0.5929624 | 0.0000081 | aldo-keto reductase family 1 member A1 [Source:HGNC Symbol;Acc:HGNC:380] |
| LPO | -1.1346622 | 0.0000082 | lactoperoxidase [Source:HGNC Symbol;Acc:HGNC:6678] |
| MT-ND3 | -1.3941667 | 0.0000089 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 [Source:HGNC Symbol;Acc:HGNC:7458] |
| FXN | -0.8011508 | 0.0000124 | frataxin [Source:HGNC Symbol;Acc:HGNC:3951] |
| CCS | -0.8888991 | 0.0000129 | copper chaperone for superoxide dismutase [Source:HGNC Symbol;Acc:HGNC:1613] |
| SESN3 | 0.7335457 | 0.0000131 | sestrin 3 [Source:HGNC Symbol;Acc:HGNC:23060] |
| CYB5R3 | -0.5519597 | 0.0000134 | cytochrome b5 reductase 3 [Source:HGNC Symbol;Acc:HGNC:2873] |
| DLD | 0.8008823 | 0.0000152 | dihydrolipoamide dehydrogenase [Source:HGNC Symbol;Acc:HGNC:2898] |
| DHRS1 | -0.8491679 | 0.0000158 | dehydrogenase/reductase 1 [Source:HGNC Symbol;Acc:HGNC:16445] |
| ALOX5AP | -0.8279202 | 0.0000177 | arachidonate 5-lipoxygenase activating protein [Source:HGNC Symbol;Acc:HGNC:436] |
| ALDH18A1 | 0.8368068 | 0.0000201 | aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722] |
| HADHA | 0.7045755 | 0.0000206 | hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:HGNC Symbol;Acc:HGNC:4801] |
| BCKDHA | 0.7519168 | 0.0000312 | branched chain keto acid dehydrogenase E1 subunit alpha [Source:HGNC Symbol;Acc:HGNC:986] |
| EGLN2 | -0.6494318 | 0.0000350 | egl-9 family hypoxia inducible factor 2 [Source:HGNC Symbol;Acc:HGNC:14660] |
| COIL | 0.6092529 | 0.0000397 | coilin [Source:HGNC Symbol;Acc:HGNC:2184] |
| DHCR7 | 0.5519582 | 0.0000498 | 7-dehydrocholesterol reductase [Source:HGNC Symbol;Acc:HGNC:2860] |
| IDH3A | 1.2514687 | 0.0000540 | isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:5384] |
| CYB5R4 | 0.7556952 | 0.0000573 | cytochrome b5 reductase 4 [Source:HGNC Symbol;Acc:HGNC:20147] |
| IMPDH1 | -0.5191490 | 0.0000576 | inosine monophosphate dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:6052] |
| FOXRED1 | -0.5894753 | 0.0000698 | FAD dependent oxidoreductase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26927] |
| TMX1 | 0.6256027 | 0.0000754 | thioredoxin related transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:15487] |
| PTGS2 | 2.0092889 | 0.0000952 | prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605] |
| PARK7 | -0.5136427 | 0.0001046 | Parkinsonism associated deglycase [Source:HGNC Symbol;Acc:HGNC:16369] |
| TET3 | 0.5851921 | 0.0001160 | tet methylcytosine dioxygenase 3 [Source:HGNC Symbol;Acc:HGNC:28313] |
| SELENOT | 0.8098330 | 0.0001181 | selenoprotein T [Source:HGNC Symbol;Acc:HGNC:18136] |
| FTO | 0.7890898 | 0.0001341 | FTO alpha-ketoglutarate dependent dioxygenase [Source:HGNC Symbol;Acc:HGNC:24678] |
| IVD | -0.4533351 | 0.0001650 | isovaleryl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:6186] |
| SELENOW | -0.8970265 | 0.0001777 | selenoprotein W [Source:HGNC Symbol;Acc:HGNC:10752] |
| ALDH1L2 | 0.7364999 | 0.0001866 | aldehyde dehydrogenase 1 family member L2 [Source:HGNC Symbol;Acc:HGNC:26777] |
| CYB5B | 0.4770099 | 0.0002536 | cytochrome b5 type B [Source:HGNC Symbol;Acc:HGNC:24374] |
| P4HB | 0.4206141 | 0.0003121 | prolyl 4-hydroxylase subunit beta [Source:HGNC Symbol;Acc:HGNC:8548] |
| ME3 | -0.8628819 | 0.0003375 | malic enzyme 3 [Source:HGNC Symbol;Acc:HGNC:6985] |
| GPX1 | 0.7188221 | 0.0003640 | glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553] |
| NQO2 | -0.6846379 | 0.0003721 | N-ribosyldihydronicotinamide:quinone reductase 2 [Source:HGNC Symbol;Acc:HGNC:7856] |
| SDHD | 0.8619113 | 0.0003789 | succinate dehydrogenase complex subunit D [Source:HGNC Symbol;Acc:HGNC:10683] |
| TECR | -0.4875875 | 0.0003948 | trans-2,3-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:4551] |
| UEVLD | 0.9680126 | 0.0003956 | UEV and lactate/malate dehyrogenase domains [Source:HGNC Symbol;Acc:HGNC:30866] |
| AOC2 | 1.5651702 | 0.0003973 | amine oxidase copper containing 2 [Source:HGNC Symbol;Acc:HGNC:549] |
| MT-ND4L | -1.2284198 | 0.0004218 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L [Source:HGNC Symbol;Acc:HGNC:7460] |
| CYP1B1 | 0.7015293 | 0.0005418 | cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597] |
| MT-ND1 | -1.0988021 | 0.0005471 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 [Source:HGNC Symbol;Acc:HGNC:7455] |
| ACADSB | 0.6701509 | 0.0005597 | acyl-CoA dehydrogenase short/branched chain [Source:HGNC Symbol;Acc:HGNC:91] |
| DUS2 | -0.6944042 | 0.0006011 | dihydrouridine synthase 2 [Source:HGNC Symbol;Acc:HGNC:26014] |
| DPYD | 1.0109534 | 0.0006067 | dihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012] |
| FASN | 0.4674484 | 0.0007743 | fatty acid synthase [Source:HGNC Symbol;Acc:HGNC:3594] |
| KDM4C | 0.5855580 | 0.0008278 | lysine demethylase 4C [Source:HGNC Symbol;Acc:HGNC:17071] |
| HADH | 0.4948329 | 0.0008947 | hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4799] |
| FDX2 | -1.0580009 | 0.0009679 | ferredoxin 2 [Source:HGNC Symbol;Acc:HGNC:30546] |
Table of the genes that could be found as proteins in the significantly enriched peptides in the immunopeptidomic data.
## [1] 44 13
| gene | log2FoldChange | padj | description |
|---|---|---|---|
| KRTCAP2 | -1.5021573 | 0.0000000 | keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:HGNC:28942] |
| PRTN3 | -1.2107807 | 0.0000000 | proteinase 3 [Source:HGNC Symbol;Acc:HGNC:9495] |
| METAP2 | 1.1040167 | 0.0000000 | methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:16672] |
| TFRC | 1.3851207 | 0.0000000 | transferrin receptor [Source:HGNC Symbol;Acc:HGNC:11763] |
| RPL35 | -1.1732016 | 0.0000000 | ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344] |
| ELANE | -1.2322149 | 0.0000000 | elastase, neutrophil expressed [Source:HGNC Symbol;Acc:HGNC:3309] |
| PXK | 1.1528337 | 0.0000000 | PX domain containing serine/threonine kinase like [Source:HGNC Symbol;Acc:HGNC:23326] |
| RBMX | 0.9197177 | 0.0000000 | RNA binding motif protein X-linked [Source:HGNC Symbol;Acc:HGNC:9910] |
| ARCN1 | 1.1220940 | 0.0000000 | archain 1 [Source:HGNC Symbol;Acc:HGNC:649] |
| PPP1R27 | -1.4553395 | 0.0000000 | protein phosphatase 1 regulatory subunit 27 [Source:HGNC Symbol;Acc:HGNC:16813] |
| PMF1 | -0.8998079 | 0.0000000 | polyamine modulated factor 1 [Source:HGNC Symbol;Acc:HGNC:9112] |
| ATP5PF | -0.9758286 | 0.0000000 | ATP synthase peripheral stalk subunit F6 [Source:HGNC Symbol;Acc:HGNC:847] |
| FLI1 | 1.4676177 | 0.0000000 | Fli-1 proto-oncogene, ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:3749] |
| TSTD2 | 2.0711363 | 0.0000000 | thiosulfate sulfurtransferase like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30087] |
| RPS10 | -1.1709501 | 0.0000000 | ribosomal protein S10 [Source:HGNC Symbol;Acc:HGNC:10383] |
| TGS1 | 1.1872364 | 0.0000000 | trimethylguanosine synthase 1 [Source:HGNC Symbol;Acc:HGNC:17843] |
| PRPF31 | -0.9557415 | 0.0000000 | pre-mRNA processing factor 31 [Source:HGNC Symbol;Acc:HGNC:15446] |
| TXNIP | 1.2337513 | 0.0000000 | thioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952] |
| DNAJA2 | 1.0801674 | 0.0000000 | DnaJ heat shock protein family (Hsp40) member A2 [Source:HGNC Symbol;Acc:HGNC:14884] |
| BCLAF1 | 0.6766773 | 0.0000000 | BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863] |
| RPS17 | -0.7267731 | 0.0000000 | ribosomal protein S17 [Source:HGNC Symbol;Acc:HGNC:10397] |
| TRIM13 | -0.7992741 | 0.0000000 | tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976] |
| NME3 | -1.3097075 | 0.0000000 | NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851] |
| LNPEP | 1.1727759 | 0.0000000 | leucyl and cystinyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:6656] |
| MTA2 | -0.7637732 | 0.0000000 | metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411] |
| RPL34 | -0.7593908 | 0.0000000 | ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340] |
| CD46 | 0.6964974 | 0.0000001 | CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953] |
| B2M | 0.8496441 | 0.0000001 | beta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914] |
| PPT1 | 1.1207877 | 0.0000003 | palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325] |
| ATP5F1B | 0.8913198 | 0.0000003 | ATP synthase F1 subunit beta [Source:HGNC Symbol;Acc:HGNC:830] |
| TUBB4B | -0.8346326 | 0.0000007 | tubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771] |
| ABHD17B | 0.8712265 | 0.0000041 | abhydrolase domain containing 17B, depalmitoylase [Source:HGNC Symbol;Acc:HGNC:24278] |
| HNRNPF | 0.7953479 | 0.0000121 | heterogeneous nuclear ribonucleoprotein F [Source:HGNC Symbol;Acc:HGNC:5039] |
| METAP1 | 0.5845978 | 0.0000131 | methionyl aminopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:15789] |
| PAPOLA | 0.5077699 | 0.0000167 | poly(A) polymerase alpha [Source:HGNC Symbol;Acc:HGNC:14981] |
| GFPT1 | 0.7942751 | 0.0000173 | glutamine–fructose-6-phosphate transaminase 1 [Source:HGNC Symbol;Acc:HGNC:4241] |
| HUWE1 | 0.4493750 | 0.0001868 | HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:30892] |
| CIRBP | -0.4092358 | 0.0002673 | cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982] |
| COPZ1 | -0.4227278 | 0.0003366 | COPI coat complex subunit zeta 1 [Source:HGNC Symbol;Acc:HGNC:2243] |
| CAD | -0.5876069 | 0.0003795 | carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:HGNC Symbol;Acc:HGNC:1424] |
| CDK17 | 0.6835569 | 0.0005126 | cyclin dependent kinase 17 [Source:HGNC Symbol;Acc:HGNC:8750] |
| FASN | 0.4674484 | 0.0007743 | fatty acid synthase [Source:HGNC Symbol;Acc:HGNC:3594] |
| PSMD7 | 0.5346745 | 0.0008086 | proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565] |
| HNRNPDL | 0.3766856 | 0.0009490 | heterogeneous nuclear ribonucleoprotein D like [Source:HGNC Symbol;Acc:HGNC:5037] |
## [1] 21 13
| gene | log2FoldChange | padj | description |
|---|---|---|---|
| CD63 | -1.0314250 | 0.0000000 | CD63 molecule [Source:HGNC Symbol;Acc:HGNC:1692] |
| LMAN1 | 1.1586409 | 0.0000000 | lectin, mannose binding 1 [Source:HGNC Symbol;Acc:HGNC:6631] |
| SRGN | 1.0732210 | 0.0000000 | serglycin [Source:HGNC Symbol;Acc:HGNC:9361] |
| ERP29 | -0.7739467 | 0.0000000 | endoplasmic reticulum protein 29 [Source:HGNC Symbol;Acc:HGNC:13799] |
| FDFT1 | 0.8132262 | 0.0000000 | farnesyl-diphosphate farnesyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:3629] |
| PSAP | 0.9303391 | 0.0000000 | prosaposin [Source:HGNC Symbol;Acc:HGNC:9498] |
| SEPTIN6 | 0.8225595 | 0.0000000 | septin 6 [Source:HGNC Symbol;Acc:HGNC:15848] |
| CRELD2 | -0.7833789 | 0.0000000 | cysteine rich with EGF like domains 2 [Source:HGNC Symbol;Acc:HGNC:28150] |
| TMED2 | 0.8504556 | 0.0000000 | transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996] |
| HYOU1 | 1.0856251 | 0.0000001 | hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931] |
| SSR1 | 0.6722112 | 0.0000002 | signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323] |
| HLA-A | -0.8742236 | 0.0000003 | major histocompatibility complex, class I, A [Source:HGNC Symbol;Acc:HGNC:4931] |
| CTDSPL2 | 0.8425381 | 0.0000021 | CTD small phosphatase like 2 [Source:HGNC Symbol;Acc:HGNC:26936] |
| LIPA | 1.1072755 | 0.0000054 | lipase A, lysosomal acid type [Source:HGNC Symbol;Acc:HGNC:6617] |
| NOMO3 | 1.7667326 | 0.0000194 | NODAL modulator 3 [Source:HGNC Symbol;Acc:HGNC:25242] |
| DHX34 | -0.6251980 | 0.0000320 | DExH-box helicase 34 [Source:HGNC Symbol;Acc:HGNC:16719] |
| RPL26 | -0.5912310 | 0.0000644 | ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327] |
| ALDH1L2 | 0.7364999 | 0.0001866 | aldehyde dehydrogenase 1 family member L2 [Source:HGNC Symbol;Acc:HGNC:26777] |
| BCAP31 | -0.4427626 | 0.0002662 | B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695] |
| GNS | 0.6935357 | 0.0004480 | glucosamine (N-acetyl)-6-sulfatase [Source:HGNC Symbol;Acc:HGNC:4422] |
| CTSA | -0.5690985 | 0.0007756 | cathepsin A [Source:HGNC Symbol;Acc:HGNC:9251] |
sessionInfo()## R version 4.2.2 (2022-10-31 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19045)
##
## Matrix products: default
##
## locale:
## [1] LC_COLLATE=English_Belgium.utf8 LC_CTYPE=English_Belgium.utf8
## [3] LC_MONETARY=English_Belgium.utf8 LC_NUMERIC=C
## [5] LC_TIME=English_Belgium.utf8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] readxl_1.4.1 msigdbr_7.5.1 clusterProfiler_4.6.0
## [4] ggrepel_0.9.2 forcats_0.5.2 stringr_1.4.1
## [7] dplyr_1.0.10 purrr_0.3.5 readr_2.1.3
## [10] tidyr_1.2.1 tibble_3.1.8 ggplot2_3.4.0
## [13] tidyverse_1.3.2
##
## loaded via a namespace (and not attached):
## [1] snow_0.4-4 shadowtext_0.1.2 backports_1.4.1
## [4] fastmatch_1.1-3 plyr_1.8.8 igraph_1.3.5
## [7] lazyeval_0.2.2 splines_4.2.2 BiocParallel_1.32.4
## [10] GenomeInfoDb_1.34.4 digest_0.6.30 yulab.utils_0.0.6
## [13] htmltools_0.5.3 GOSemSim_2.24.0 viridis_0.6.2
## [16] GO.db_3.16.0 fansi_1.0.3 magrittr_2.0.3
## [19] memoise_2.0.1 googlesheets4_1.0.1 tzdb_0.3.0
## [22] Biostrings_2.66.0 graphlayouts_0.8.4 modelr_0.1.10
## [25] vroom_1.6.0 timechange_0.1.1 enrichplot_1.18.3
## [28] colorspace_2.0-3 blob_1.2.3 rvest_1.0.3
## [31] haven_2.5.2 xfun_0.34 crayon_1.5.2
## [34] RCurl_1.98-1.9 jsonlite_1.8.3 scatterpie_0.1.8
## [37] ape_5.6-2 glue_1.6.2 polyclip_1.10-4
## [40] gtable_0.3.1 gargle_1.2.1 zlibbioc_1.44.0
## [43] XVector_0.38.0 BiocGenerics_0.44.0 scales_1.2.1
## [46] DOSE_3.24.2 DBI_1.1.3 Rcpp_1.0.9
## [49] viridisLite_0.4.1 gridGraphics_0.5-1 tidytree_0.4.2
## [52] bit_4.0.4 stats4_4.2.2 httr_1.4.4
## [55] fgsea_1.24.0 RColorBrewer_1.1-3 ellipsis_0.3.2
## [58] pkgconfig_2.0.3 farver_2.1.1 sass_0.4.2
## [61] dbplyr_2.2.1 utf8_1.2.2 labeling_0.4.2
## [64] ggplotify_0.1.0 tidyselect_1.2.0 rlang_1.0.6
## [67] reshape2_1.4.4 AnnotationDbi_1.60.0 munsell_0.5.0
## [70] cellranger_1.1.0 tools_4.2.2 cachem_1.0.6
## [73] downloader_0.4 cli_3.4.1 generics_0.1.3
## [76] RSQLite_2.2.19 gson_0.0.9 broom_1.0.1
## [79] evaluate_0.18 fastmap_1.1.0 yaml_2.3.6
## [82] ggtree_3.6.2 babelgene_22.9 knitr_1.41
## [85] bit64_4.0.5 fs_1.5.2 tidygraph_1.2.2
## [88] KEGGREST_1.38.0 ggraph_2.1.0 nlme_3.1-160
## [91] aplot_0.1.9 xml2_1.3.3 compiler_4.2.2
## [94] rstudioapi_0.14 png_0.1-7 reprex_2.0.2
## [97] treeio_1.22.0 tweenr_2.0.2 bslib_0.4.1
## [100] stringi_1.7.8 highr_0.9 lattice_0.20-45
## [103] Matrix_1.5-1 vctrs_0.5.0 pillar_1.8.1
## [106] lifecycle_1.0.3 jquerylib_0.1.4 data.table_1.14.4
## [109] cowplot_1.1.1 bitops_1.0-7 patchwork_1.1.2
## [112] qvalue_2.30.0 R6_2.5.1 gridExtra_2.3
## [115] IRanges_2.32.0 codetools_0.2-18 MASS_7.3-58.1
## [118] assertthat_0.2.1 withr_2.5.0 S4Vectors_0.36.0
## [121] GenomeInfoDbData_1.2.9 parallel_4.2.2 hms_1.1.2
## [124] grid_4.2.2 ggfun_0.0.9 HDO.db_0.99.1
## [127] rmarkdown_2.18 googledrive_2.0.0 ggnewscale_0.4.8
## [130] ggforce_0.4.1 Biobase_2.58.0 lubridate_1.9.0